Read .fasta python

>>> import fastaparser
>>> with open("fasta_file.fasta") as fasta_file:
        parser = fastaparser.Reader(fasta_file)
        for seq in parser:
            # seq is a FastaSequence object
            print('ID:', seq.id)
            print('Description:', seq.description)
            print('Sequence:', seq.sequence_as_string())
            print()

Source: pypi.org

Similar codes

12 votes129 views6 answers
List python
Python
1 vote132 views1 answer
Represent NaN with pandas in python
Python
0 vote123 views1 answer
How to use a function to find the total in spyder python
Python
1 vote170 views1 answer
Python how to add turtle in tkinter
Python
56 votes132 views6 answers
How to open a file with python
Python
1 vote135 views1 answer
Pandas iterate over a series
Python
0 vote132 views1 answer
Et.dump export file to xml write method
Python
4 votes199 views2 answers
Authentication views django
Python Django
0 vote161 views1 answer
Python flask models user
Python Flask
5 votes128 views1 answer
Getpass
Python