Fsl reg

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl reg

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

2 votes153 views1 answer
How to see the battery health on an older macbook
Shell/Bash
0 vote120 views2 answers
How to run nessus in kali
Shell/Bash
1 vote155 views3 answers
Install itertools
Shell/Bash
4 votes221 views3 answers
Npm install from git
Shell/Bash
0 vote161 views1 answer
Mysql backup dump docker file
Shell/Bash
2 votes154 views1 answer
Awk variable
Shell/Bash
24 votes151 views4 answers
Loop over array of strings bash
Shell/Bash
2 votes223 views3 answers
Conda install seaborn
Shell/Bash
1 vote175 views1 answer
Clear
Shell/Bash
0 vote159 views1 answer
Correct Folder Permissions Ubuntu 18.04 Server
Shell/Bash