/Shell/Bash/Bcftools extract information

Bcftools extract information

# Example usage:
bcftools query --format '%CHROM\t%POS\t%INFO/END\t[%GT]\n' input_file.vcf
# Where:
#	- Fixed columns like CHROM and POS are referred to as %COLUMN
#	- Info fields need to be specified as %INFO/TAG
#	- Format fields need to be enclosed in brackets
#	- The tab \t and new line \n characters are used to format the output

Source: samtools.github.io

Similar codes

0 vote156 views1 answer
Awk print only range of lines
Shell/Bash
4 votes160 views4 answers
List to comma separated list
Shell/Bash
4 votes161 views3 answers
Install sass loader
Shell/Bash
0 vote149 views1 answer
Install drush on ubuntu 18.04
Shell/Bash
1 vote154 views1 answer
Address already in use flask ubuntu
Shell/Bash
1 vote148 views2 answers
How to check current status of apache2 ubuntu 18
Shell/Bash
0 vote156 views1 answer
AWS EC2 Stress tool activate on command line
Shell/Bash
-2 votes161 views1 answer
Install apache on mac
Shell/Bash
0 vote165 views1 answer
Metasploit msf commands kali linux
Shell/Bash
0 vote178 views1 answer
How to discard files from stash in git
Shell/Bash