Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

1 vote189 views2 answers
Debian docker
Shell/Bash
0 vote189 views1 answer
Source bash_profile on startup mac
Shell/Bash
0 vote168 views2 answers
Git already up to date but not
Shell/Bash
0 vote200 views1 answer
How to uninstall photos app in windows 10
Shell/Bash
0 vote237 views1 answer
Please remove any global installs with one of the following commands:
Shell/Bash
19 votes199 views2 answers
Ls human readable size
Shell/Bash
0 vote217 views1 answer
Start nginx in terminal
Shell/Bash
0 vote231 views1 answer
How to grep only exact match for a word in a file
Shell/Bash
0 vote178 views3 answers
Run laravel git project
Shell/Bash
9 votes207 views5 answers
Check react version
Shell/Bash