Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

7 votes182 views2 answers
Pyinstaller make exe
Shell/Bash
0 vote177 views1 answer
Pacman export package list
Shell/Bash
2 votes182 views2 answers
Vscode prettier show errors
Shell/Bash
0 vote271 views2 answers
Kill all process
Shell/Bash
105 votes181 views6 answers
Install python mac
Shell/Bash
0 vote238 views1 answer
Magento ssh commands
Shell/Bash
0 vote195 views3 answers
Github/hacksofteare
Shell/Bash
1 vote185 views2 answers
Gitignore for django project
Shell/Bash
20 votes193 views3 answers
Find which process is using port mac
Shell/Bash
1 vote185 views1 answer
How to remove git hooks
Shell/Bash