Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

1 vote132 views1 answer
Crypto installing error
Shell/Bash
0 vote148 views1 answer
Ls in mb mac
Shell/Bash
3 votes164 views1 answer
How to stop a node server from running
Shell/Bash
1 vote139 views1 answer
Npm install line awesome
Shell/Bash
1 vote131 views1 answer
Makefile ifeq or
Shell/Bash
35 votes138 views4 answers
Macos brew
Shell/Bash
0 vote144 views1 answer
Import external python modules in blender
Shell/Bash
0 vote152 views1 answer
Read all test in directory golang
Shell/Bash
3 votes134 views2 answers
How to update local repo when i make changes to github remote repo
Shell/Bash
0 vote134 views1 answer
Batch file extension
Shell/Bash