Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

44 votes123 views6 answers
Yarn install in ubuntu
Shell/Bash
50 votes105 views7 answers
Fatal: refusing to merge unrelated histories
Shell/Bash
24 votes100 views2 answers
Create .gitignore
Shell/Bash
9 votes103 views6 answers
ImportError: No module named tensorflow
Shell/Bash
0 vote106 views1 answer
Install packages from txt
Shell/Bash
0 vote119 views1 answer
Batch programming check http call status
Shell/Bash
0 vote114 views1 answer
Cmd change start in
Shell/Bash
0 vote108 views1 answer
How to reslove Jira Software is licensed but not currently installed
Shell/Bash
0 vote107 views1 answer
Put files in every subfolder in powershell
Shell/Bash
0 vote98 views1 answer
Install react 16
Shell/Bash