Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

2 votes153 views1 answer
Firewalld not running centos 7
Shell/Bash
20 votes183 views3 answers
How to open postgresql in mac
Shell/Bash
1 vote156 views2 answers
How to turn off aslr in gcc
Shell/Bash
1 vote152 views1 answer
Bash limit memory use of a function
Shell/Bash
0 vote163 views1 answer
How to denote spaces in path
Shell/Bash
0 vote145 views1 answer
How to compile cython pyx to executable
Shell/Bash
4 votes148 views3 answers
Kill screen sessions
Shell/Bash
1 vote162 views1 answer
ModuleNotFoundError: No module named 'tensorflow_addons'
Shell/Bash
2 votes212 views1 answer
Ubuntu darling
Shell/Bash
0 vote155 views1 answer
Kill occupation port windows
Shell/Bash