Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

1 vote153 views1 answer
Installing star aligner in macOS
Shell/Bash
3 votes154 views2 answers
Java to jar
Shell/Bash
23 votes145 views4 answers
Vim plug
Shell/Bash
1 vote140 views2 answers
Heroku buildpacks
Shell/Bash
2 votes142 views2 answers
Git remove last merge commit
Shell/Bash
0 vote155 views1 answer
Linunx reload shell
Shell/Bash
2 votes142 views1 answer
Git add submodule with different name
Shell/Bash
4 votes163 views1 answer
Homebrew Unknown command: cask
Shell/Bash
2 votes202 views1 answer
Stylelint run
Shell/Bash
0 vote145 views1 answer
Winbuilder
Shell/Bash