/Shell/Bash/How to chop large sequences in linux

How to chop large sequences in linux

How to chop large sequences in linux

awk 'BEGIN {n_seq=0;} /^>/ {if(n_seq%1000==0){file=sprintf("myseq%d.fa",n_seq);} print >> file; n_seq++; next;} { print >> file; }' < sequences.fa

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Source: biostars.org

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