/Shell/Bash/Bash read length of fasta file seqeunces

Bash read length of fasta file seqeunces

Bash read length of fasta file seqeunces

awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa

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Source: stackoverflow.com

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